rs50587353 SNP Detail

Summary

• ID
  rs50587353
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110975763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGCAGC TGTGGTTGTT
  AGGCAGAGGG AAACCCATTG CTGGCCCCGG CCTACTTTCT GTTTCATACT CTCCTCTCCG
  GCCACCTGCC CACACTATGA TGGCAGAGCT CTGCGGTTAA AATAGAGCTC CTGTAGCCTG
  TTAAGCCAGA CCAAAGTTCA TCCTGGGAAC CAATGAGTTT ACTCGTCACT TACAGATGGA
  T
  GGTGACCCTA AAGCAGTACA CATAGGAAGA TCAGCACCCA GCATGGACAA TGACTCCCTC
  ATGGCCGTGT GCTGTAAATA TTATCTTGGG GGATTTTACT CTACTTAGAC CATACGGTTC
  CCAAATAAAA GACACAAATC TTTTAAGGCA TTAGAGCTGG ACAGGTATCA AGCCTCTGTG
  TTTGTCTATT CCCACTATTA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149056734	ENSMUSSNP444586	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50587353					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110975763 () rs orientation: forward

Symbol	Name	Function Class
Hscb	HscB iron-sulfur cluster co-chaperone	1182 bp downstream
Rr616963	regulatory region 616963	380 bp distal
Rr616964	regulatory region 616964	within coordinates