rs50587911 SNP Detail

Summary

• ID
  rs50587911
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150322992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA ACCACAGAAG TAACTTCTGT
  T
  GAAAAAAAAG CTGCCTTTGC TTCAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148050729	ENSMUSSNP979223	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50587911					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150322992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15348	CpG island 15348	735 bp distal
Eno1	enolase 1, alpha non-neuron	within coordinates
Rr377416	regulatory region 377416	930 bp downstream
Rr398880	regulatory region 398880	1711 bp upstream
Rr605239	regulatory region 605239	1573 bp distal
Rr605240	regulatory region 605240	1695 bp proximal
Rr605241	regulatory region 605241	1733 bp proximal
Rr605242	regulatory region 605242	1786 bp proximal
Tssr40390	transcription start site region 40390	1768 bp downstream
Tssr40391	transcription start site region 40391	1755 bp downstream
Tssr40392	transcription start site region 40392	1739 bp downstream
Tssr40393	transcription start site region 40393	1726 bp downstream
Tssr40394	transcription start site region 40394	1716 bp downstream
Tssr40395	transcription start site region 40395	1327 bp downstream
Tssr40396	transcription start site region 40396	1296 bp downstream
Tssr40397	transcription start site region 40397	1193 bp downstream
Tssr40398	transcription start site region 40398	830 bp downstream
Tssr40399	transcription start site region 40399	798 bp downstream