rs50588327 SNP Detail

Summary

• ID
  rs50588327
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38335240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCCAGCAC CCATCGTTAG GATTTCTCTG CACTTGACTA
  GTGACATAAC CAGCTGTTCT TTTGCCACCA AACTGCCAAT TTGGCTCACT TGTTGTAGGG
  C
  TTGTGGTCTT TTCTTAAGGC AACATGACAG AGAGGCAACC ATTTAGAAGA GGCACGTGTG
  ATCTTCCAAA ATACAACTGT TAGTTCCTAG TCTGAAGAT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134829315	ENSMUSSNP2105103	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320717654	CHEV_3_38180013	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50588327					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38335240 () rs orientation: forward

Symbol	Name	Function Class
Rr575652	regulatory region 575652	413 bp distal
Rr575653	regulatory region 575653	560 bp proximal
Rr575654	regulatory region 575654	1695 bp proximal