rs50588822 SNP Detail

Summary

• ID
  rs50588822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:4368534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCAGTT TCAAAGGGGG
  AAGTAAAAGT GTGTATGGCC ATAATCACTT CTGCTTAAAA CTTTATTTCA GTTGGTATAA
  CAGAATGACT TATCAGTTAT AAATTAGAAC AAATAATTGT ATGTCTGGTC CTTGTATCCT
  AATTTTATCA ATGGAATTGT GCACTAATTA CTATTATACT TTTTTAGGTG TCCTTTGTAA
  Y
  ACACCATGTA TAAGTCTTAG TTTTTAAATT TTTCTGCATA GTTAAATCAT AATTAAATCT
  GTTTCTGATG CTCTTTTTAA AAAATGCTTT CTGGTCAACT GCTTTGATGA TATCATGGCT
  AAGAAGATGG AAGGATAGAT ACTCAGGCCT TATTAAAGAA AATAATAAGC TCTAGGAAAG
  TACAATCCTG GGAGAAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52704724	NES15547691	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50588822					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52704724	NES15547691	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:4368534 () rs orientation: forward

Symbol	Name	Function Class
Gm6773	predicted gene 6773	1102 bp upstream