rs50589258 SNP Detail

Summary

• ID
  rs50589258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38124926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTGAAA CACAATGTTT
  ACAATGCAAA TAAATGAAGG ATATAAGCAG GCCAAAGCAG AAACCTCCCC TGGGACAGAA
  AGAGGGCTTC TCCTGCCAAC GCATCATCAC CGTGTTTGTA GTGCTGGCCT AGGGTTTGGG
  CTGGCCTTGC TCGTGCCTCT GTGGAGCAGA GTACATAGCC TGATGCACAC TTGCCTGTGT
  Y
  GGTCACTCCC TTAGCCCATA CAAAGGAAGA ATGAAAACCT GGGAACCATG AATCTTGTTG
  CTTGCCACAC TAGAGGGAGG CTCACTCTGA CTTCTCAATA TGGGCCTTGA AGGTTGCCTC
  CCATTGGGAG ACTTGAGCCT GCTCCCCCCC TCCCCCGCCC TCCCCCCTCC CCCCTACACA
  CACGCCCAGG TCCATCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61763443	NES17703742	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50589258					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61763443	NES17703742	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38124926 () rs orientation: forward

Symbol	Name	Function Class
Rr283322	regulatory region 283322	within coordinates
Rreb1	ras responsive element binding protein 1	within coordinates