rs50589315 SNP Detail

Summary

• ID
  rs50589315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:111860905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCCTGAC CTTCAAAAAA
  AGGCTTACTT TCACCCACTT CAGCAAAGAC TAGCTTGTAA ACCAAGACAT TGGCTCATTA
  CTATATATAA TGATAGCTAC ACTTCACAAA TAGAGCACAA TCATTTATCG ATCCAACCCA
  CTCTCTCCTT GCTGGCAAAT CAAAACATGA TCAGAAGTTT GTTTGGCAAG TTCAGACAAA
  R
  TAGAATGATC TGTGTGATTT GGCTGACTAG TAATCTCAAA AGCTGTGTCT ACACTTTGCC
  AGATCACAAA ATGCAAATGA GCTATCCATG ATTCATTATT CAGTACCACA CTCCATGAAA
  TGAGGATAAC AATAAGTGCC TACTACTGCA CTAGATTTTT GTTGAGATAA GTTTTTTTTT
  CTTAACTACT GCAAAGTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134277770	ENSMUSSNP5831561	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325913359	CHEV_X_110064817	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50589315					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:111860905 () rs orientation: forward

Symbol	Name	Function Class
Rr2637	regulatory region 2637	905 bp distal
Rr6449	regulatory region 6449	1153 bp distal