rs50589764 SNP Detail

Summary

• ID
  rs50589764
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68913657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGGGCC GCCGCCCTCC
  CAGGACGGTG CCCACAGCGA CGAAGAGATG GAGCAACCGG CCGGCGAAGC GGAGAGCGCT
  GCACCCGCAA GTGAGTGACA GGTCGGGATC CCCGTGCGTC GGAAGCCTGT GGAGACCCTC
  TGAGGGTGGC GGGGCGCAGG CGACGACAGG TTGATTTGGG AAGCTCCGGA AAGCCGTTCT
  K
  TGGTTTTCAG AGGAATTCCA TGCAGTTTGC TCTAACGGTT CTGGAAGATA TGAGAGTGAG
  CGGAAAACTT GCGTTGTGAG TTTCTGTGTT TTAGAGTAGT ACTGACCTCT TTCTCATATT
  TCCGCTGAAA GCGGCATGGG TGCTGAGCGC CTCTGCGCCC TTAGACTGGA GTGAATGTGA
  TGTGGAGTTG CGTGACTCGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135264496	ENSMUSSNP17158	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50589764					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68913657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13255	CpG island 13255	within coordinates
Ift80	intraflagellar transport 80	1765 bp upstream
Rr397713	regulatory region 397713	1535 bp downstream
Rr578108	regulatory region 578108	1792 bp distal
Rr578109	regulatory region 578109	1323 bp distal
Rr578110	regulatory region 578110	within coordinates
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr901	transcription start site region 901	1911 bp upstream
Tssr29506	transcription start site region 29506	1593 bp downstream
Tssr29507	transcription start site region 29507	1303 bp downstream
Tssr29508	transcription start site region 29508	1182 bp downstream
Tssr29509	transcription start site region 29509	1011 bp downstream
Tssr29510	transcription start site region 29510	970 bp downstream
Tssr29511	transcription start site region 29511	839 bp downstream
Tssr29512	transcription start site region 29512	582 bp downstream
Tssr29513	transcription start site region 29513	378 bp downstream
Tssr29514	transcription start site region 29514	252 bp downstream
Tssr33516	transcription start site region 33516	1946 bp upstream
Tssr33517	transcription start site region 33517	1857 bp upstream
Tssr33518	transcription start site region 33518	1825 bp upstream
Tssr33519	transcription start site region 33519	1779 bp upstream
Tssr33520	transcription start site region 33520	1760 bp upstream
Tssr33521	transcription start site region 33521	1739 bp upstream
Tssr33522	transcription start site region 33522	99 bp downstream