rs50590006 SNP Detail

Summary

• ID
  rs50590006
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16455028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGACTGCT CTACCAGAGG
  TCCTGAGTTC AATTCCCAGC AACCACAGGG TGGCTCACAG CTATCTGTCA TGGGATCTGA
  TGCCCTCTTC TGGTGTGGCT GAAGACAGCA ACAGTGTACT CATATGAATA AAAGAAATAA
  AACAAATTTT AAAAAGAAAA GAAAAAAAGA AAGTCAAATC CTGGAAGCGG GCTTCTTTGG
  G
  GCAGCCATCT TTCATTCCCT CCCTACCTTA CACCTCCCCT GTCACCTGCA CCAGGACAAA
  TGAACGAACA GCTGACCAAT TATCACCTAA GAAGAAGCAG GGGCTGCCAG CTTGAGCCTC
  CACCAAGATT CCCCAGTGTG ACCCTGGAGA CCTGCACAAC TAGAAGTCAC ATGAACCAGA
  GCCCTAGGGA CTGGGTAGAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148394857	ENSMUSSNP4375660	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50590006					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16455028 () rs orientation: forward

Symbol	Name	Function Class
Ceacam9	CEA cell adhesion molecule 9	826 bp upstream
Gm5586	predicted gene 5586	1193 bp upstream
Tssr64618	transcription start site region 64618	851 bp upstream
Tssr70767	transcription start site region 70767	1163 bp upstream