rs50590361 SNP Detail

Summary

• ID
  rs50590361
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:73950955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGCTGAAC TATATCCCTA GCCTTCGTTT TACTTTTTAC
  TCAAGACAGG CTCTCACAGG CTGGCCTTGA ACTCACTGTT GTGTGGCAGT TTTTCAAAAG
  A
  AAGGCAAAAC ATTCTGTCAT GCAGACTAGC TACACTAGGC CCCTCTCTAC AAGTGCATGT
  GAGCACTAAA GACCGAGAGG CACTCTTAGC TAAGCCCAT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147453927	ENSMUSSNP4074234	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325684976	CHEV_18_73977538	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50590361					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:73950955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10208	CpG island 10208	1863 bp distal
Gm58443	predicted gene, 58443	within coordinates
Gm58445	predicted gene, 58445	1378 bp upstream
Tssr153889	transcription start site region 153889	1341 bp upstream