rs50590444 SNP Detail

Summary

• ID
  rs50590444
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:15889111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCTTCAT TATGTCTCAA
  ATATTACTTG TGTAAATTCT GAAATCTAAA AAGAGCCCAA GCCTTTTGGC AAGGCATATT
  CATCTGCCTG TTGTTCTGTC TCCTCGATCC TTGCTCAGTC GCTACAGTGC GTAGAAGCCC
  CTGGAGTAGG CTGGGGCTGC AGTGAGACTA AGTTCTCTCT AGAGTTGCTC TGAGTGCTGC
  W
  CAGCCCCCGG TACTTTACAT CTTAAAGGGC CTTTATAAAC ATGATCAAAT TCCATGCCTT
  TGTATGGACA CAAAGCCATA TTAATGAACT TTGTGCTGAA TCTGAAATCA GTGGGAATTG
  GAGGAGATCA ATGAACAGAT AATGAAATTC ATTGTCCACA TTGAGCTGTC TATTAAAAAA
  AAAAAAATAG GAGGGGAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61751978	NES17684189	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50590444					SNP	A	A	T	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61751978	NES17684189	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:15889111 () rs orientation: forward

Symbol	Name	Function Class
Gli3	GLI-Kruppel family member GLI3	Intron
Rr2117	regulatory region 2117	within coordinates
Rr2118	regulatory region 2118	1358 bp proximal
Rr475256	regulatory region 475256	795 bp proximal