rs50590888 SNP Detail

Summary

• ID
  rs50590888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151996977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAGGAAC AGAAGAGCCA
  CGCGCTAGGC TGGAGGGCTG GGCTGGAGAG CTGGCCTGAG GCTAACGCTA AGGCTAGCAC
  TACTGCACCA GCAGAGTCTC CAGTGGGGAA CCTGGCAGTT CTGGTCTCCG GGGCATTCAC
  ACTCATATGT GCATTCCCAC ACTTCATTAA AAATAACATC TTTGGCCAGG CGGTGGTGGC
  R
  CACGCCTTTA ATCCCAGCAC TTGGGAGGCA GAGACAGGCG GATTTCTGAG TTCGAGGCCA
  GCCTGGTCTA CAGAGTAAGT TCCAGGACAG TCAGGGCTAC ACAGAGAAAC CCTGTCTGGA
  AAAACCAAAA CCAACCAAAC AAAAAAACAT CTTTTGCAAA TAATTCAGTT GTTAAATCCA
  ACTACTTAAT CTACCAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136101816	ENSMUSSNP7194558	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50590888					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151996977 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Tssr32405	transcription start site region 32405	1009 bp downstream