rs50592112 SNP Detail

Summary

• ID
  rs50592112
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41490280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGCCAAG GGTTTGGCTG AGCGGAGGAG ACTGAGTGAG
  TGGCTTTCCA AATCCCAGGA CCATAAGTGG CAAATTAGTG CACATTGCAA CCGGAGGCAA
  M
  CGGCAAAACT CGGCCATTCA AAGGCAAGAG TTTTAGCATC ATGGTCATTG TGTGCCTGAA
  GAGCGTCTAT GTATCTTAAA TATAGACTTG AGTTGTTGC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61386162	NES16764743	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50592112					SNP	C	C	A	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386162	NES16764743	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41490280 () rs orientation: forward

Symbol	Name	Function Class
Gm51670	predicted gene, 51670	within coordinates
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677060	regulatory region 677060	20 bp proximal
Rr677061	regulatory region 677061	524 bp proximal
Rr677062	regulatory region 677062	1265 bp proximal
Tssr84512	transcription start site region 84512	676 bp upstream
Tssr84513	transcription start site region 84513	704 bp upstream
Tssr84514	transcription start site region 84514	866 bp upstream
Tssr84515	transcription start site region 84515	951 bp upstream
Tssr84516	transcription start site region 84516	986 bp upstream
Tssr84517	transcription start site region 84517	1019 bp upstream
Tssr84518	transcription start site region 84518	1719 bp upstream
Tssr84519	transcription start site region 84519	1767 bp upstream
Tssr84520	transcription start site region 84520	1919 bp upstream
Tssr84521	transcription start site region 84521	1960 bp upstream
Tssr84522	transcription start site region 84522	1984 bp upstream
Tssr88995	transcription start site region 88995	528 bp downstream
Tssr88996	transcription start site region 88996	562 bp downstream
Tssr88997	transcription start site region 88997	1802 bp downstream