rs50592172 SNP Detail

Summary

• ID
  rs50592172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43879136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAG AGGTGAAGCG GGATTCTGGG
  Y
  ACAAAGTAGC AAAATACGAG CTGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss62747675	NES17340458	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	T	C	C	C	C		C	T		T
ss145670520	ENSMUSSNP6153195	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss325395754	CHEV_17_43705194	CHEVERUD	SCREENING_POP	f	SNP												C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs50592172					SNP	C	C	C	T	C	C	T	C	C	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62747675	NES17340458	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43879136 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	78 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Rr527121	regulatory region 527121	within coordinates
Rr527122	regulatory region 527122	35 bp proximal
Tssr144685	transcription start site region 144685	240 bp downstream
Tssr144686	transcription start site region 144686	108 bp downstream
Tssr144687	transcription start site region 144687	88 bp downstream
Tssr144688	transcription start site region 144688	45 bp upstream
Tssr144689	transcription start site region 144689	202 bp upstream
Tssr144690	transcription start site region 144690	237 bp upstream
Tssr144691	transcription start site region 144691	257 bp upstream
Tssr144692	transcription start site region 144692	313 bp upstream
Tssr144693	transcription start site region 144693	361 bp upstream
Tssr144694	transcription start site region 144694	396 bp upstream
Tssr144695	transcription start site region 144695	444 bp upstream
Tssr144696	transcription start site region 144696	461 bp upstream
Tssr144697	transcription start site region 144697	1151 bp upstream
Tssr148130	transcription start site region 148130	259 bp downstream
Tssr148131	transcription start site region 148131	1703 bp downstream
Tssr148132	transcription start site region 148132	1726 bp downstream