rs50592619 SNP Detail

Summary

• ID
  rs50592619
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122036812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGCATGCT CTGCGTCCTG TTCTGGAGAC TGGGGATAAA
  TAGCATTGCT GCTGGCTGCT TCTCCAATCG CAGCCCTATC TGTCCTGTGC TGTGACATTT
  R
  TACTATCATA GTTCATCTAC AAACCCGTCA CTCCCAACTG CCACCAAGAG GTTTTAAAAA
  ATAGCTCTTT AAAAAAAACT TTTATTACAA TAGATCAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135737724	ENSMUSSNP3658799	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320909871	CHEV_3_121946081	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50592619					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122036812 () rs orientation: forward

Symbol	Name	Function Class
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	within coordinates
Rr375675	regulatory region 375675	within coordinates
Rr584261	regulatory region 584261	49 bp distal
Rr584262	regulatory region 584262	within coordinates
Rr584263	regulatory region 584263	35 bp proximal
Rr584264	regulatory region 584264	690 bp proximal
Rr584265	regulatory region 584265	1579 bp proximal
Tssr31477	transcription start site region 31477	34 bp downstream