rs50593006 SNP Detail

Summary

• ID
  rs50593006
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19117537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAT TAGCTGTGTC AGTAAGAGGG
  S
  CACAGAAATA GGGTTCAGCC TGCAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148474279	ENSMUSSNP837770	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss322117093	CHEV_7_19968961	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50593006					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19117537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18481	CpG island 18481	952 bp distal
Ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2	within coordinates
Gm26852	predicted gene, 26852	within coordinates
Rr400148	regulatory region 400148	1523 bp downstream
Rr643124	regulatory region 643124	1562 bp distal
Rr643125	regulatory region 643125	1594 bp distal
Tssr64844	transcription start site region 64844	1560 bp downstream