rs50594554 SNP Detail

Summary

• ID
  rs50594554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72686392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGACCT CTTAGTATCT
  CCCATAATGT TTACTGAAGA GGCTGAAGGC ATTCTAGAAT ATTGCAGAAT GCTCTGGAGT
  TGCAATACTT ACTTATCATA ATAGTCCATT CAGCAGCCAC AGTATCCCTG CTGTGTGCCA
  ATCAGTTTAT CCCATCACCT GCACCTCCGG AGCCCTAAGG ACACAGACCG GAGCACTCTG
  R
  CTGAGCTGAG CGAGTCAGGA ATCCACGGAG AAAACAGGAG GGCAGGGAGG GGCTCTACGG
  AATTGCTTTA GGAATTCCAG CTGAAGCCGG GAAGGAGGCC CACCGGAGTC AGAGAGCCGG
  AGGGAGAGCA GGAAGGAATG CAGAAGTGGG TGTGGGTCTG TCCGCTTTCA CTCCCTCCAG
  CCTTTGCTGG GGGGTAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61421325	NES16805523	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50594554					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61421325	NES16805523	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72686392 () rs orientation: forward

Symbol	Name	Function Class
Gm27204	predicted gene 27204	within coordinates
Gm68819	predicted gene, 68819	1305 bp upstream
Rr197250	regulatory region 197250	1192 bp distal
Rr197251	regulatory region 197251	792 bp distal
Rr197252	regulatory region 197252	409 bp proximal