rs50595890 SNP Detail

Summary

• ID
  rs50595890
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56529788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG TAAACCTCCC AGTGTATAGC
  S
  AGCTCACCCG ATGCAGCGCA GGTGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss149044667	ENSMUSSNP6385962	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324346619	CHEV_13_56483336	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50595890					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56529788 () rs orientation: forward

Symbol	Name	Function Class
Rr272828	regulatory region 272828	1788 bp distal
Rr276642	regulatory region 276642	1613 bp proximal
Rr284344	regulatory region 284344	within coordinates