rs50596431 SNP Detail

Summary

• ID
  rs50596431
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185045292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACATAAGC TATAAATGAA
  ATTGACATGT CAGAGTTTGA GTCCAGAGTT TAATTCTGTC AGTCTTTAAA CTCATTTGGG
  ACACGAGGAA TCCCAGGTTC TCTTTGGGAA ACAAGTAAGT ATATTTAGAG GCAACTCGCA
  GACTCTCGTC CAGGAAGCAG AAAATCCAGG CGCGGCAGAG CTCACCGGGA ATCTCAGCTC
  Y
  CTGGAAGCTG AGGCAGGACT GCAAGGTACA GGCTAGGTCT TGTCCCAAAC TGCCACCACT
  CCCACCACAC ACCAGGAAGA GGTAGAGGGC TGGGGCTAGC TCCAGTCTCC TGTAGAGTAC
  TTGCCTGGGA TGCACCAGGC TCCAGGTTCA ATCCTCAAGA CTCCTCCACA CCGAGGGAGT
  AGTGTTTTAA AGCTAAGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146427390	ENSMUSSNP2656423	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320174686	CHEV_1_187136974	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50596431					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185045292 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	within coordinates
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir194-1	microRNA 194-1	224 bp upstream
Mir215	microRNA 215	486 bp upstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	224 bp proximal
Rr425363	regulatory region 425363	898 bp distal
Tssr10600	transcription start site region 10600	895 bp downstream
Tssr10601	transcription start site region 10601	575 bp upstream