rs50599256 SNP Detail

Summary

• ID
  rs50599256
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44023624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGTATACA GCACTTATAG
  CATATTCGGT ATTAAGAATG TTCTAGAGAT GATGAGGGAT GGGGAAGGAA GCTGTGATGG
  CAACACAGCC TGAATTCCCA GTGCCCGGAA GGCTGTGGAA TGAGGGTGAA GGTTCCGTTG
  GGTCTGGGCT AAACCTGGGA CTCTAAGTGA TAATGAAAAC AACAACAATA AAGTCTGTGC
  K
  AGGACCTGGG CGCAGTGGAA GCTGCACTGA TCATCTGGCC GTCTGCTTTG AACTTCTAGA
  ACTTCCTCCC AGGTGGAGTG AAATGCTTGT AAAGATGCCC AGACTAGAAA AATATCCCAA
  GGGCTGGCAA GTACATTTGT TTCCAGAGCT TTTGTTAACA CAGAGTTCCT CGGAGTTCTG
  AAGGACAGAA TGAAGTGTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52252467	NES15252619	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50599256					SNP	T	T	T	T	T	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52252467	NES15252619	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44023624 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1509	CpG island 1509	829 bp proximal
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
D10Mit38	DNA segment, Chr 10, Massachusetts Institute of Technology 38	1543 bp distal
Gm67081	predicted gene, 67081	430 bp upstream
Rr430916	regulatory region 430916	1215 bp proximal
Rr430917	regulatory region 430917	1334 bp proximal
Rr430918	regulatory region 430918	1417 bp proximal
Tssr97502	transcription start site region 97502	1159 bp downstream
Tssr97503	transcription start site region 97503	1188 bp downstream
Tssr97504	transcription start site region 97504	1219 bp downstream
Tssr97505	transcription start site region 97505	1313 bp downstream
Tssr97506	transcription start site region 97506	1334 bp downstream