rs50599399 SNP Detail

Summary

• ID
  rs50599399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:160021980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATG CCCAATTATG TTGTGTGTGG
  Y
  GTGGGGGTGA GTGGGAATGA GTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145886067	ENSMUSSNP6114015	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50599399					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160021980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi916	CpG island 916	493 bp proximal
Mrps14	mitochondrial ribosomal protein S14	805 bp upstream
Rr13519	regulatory region 13519	380 bp distal
Rr28809	regulatory region 28809	20 bp proximal
Rr372319	regulatory region 372319	178 bp upstream
Tssr9641	transcription start site region 9641	827 bp upstream