rs50599720 SNP Detail

Summary

• ID
  rs50599720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34877268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTTTAAA GCATGTCAAC
  AATTAAAGCA AGAATTCCTT TTCTGAAGGA GCCACACCAC ACTACAGGAA CCTCAAAGAA
  TTCAGCAAAG GGATCAACGC CTGCACTGTC AGAGAAGACT ATATGATGAA AAAAAGTAAG
  ATGAAGAAAC CTGTTTGAAA AGGCCCAGAG AAAAATGTGC TACTGTCAAA AGCAGCCTGA
  R
  TGATGCGCAG TGGGTGGTGC ACTGCAGGTG GTACTCTGCA GGTGATACAT TGCAGGTGGT
  GCACTGCAGG TGGCACTCTG CAGGTGATAC ATTGCAGGTG GTGCTCTGCA GGTGATACTC
  CACAGACAGC TTTCTACTCC CTGTGCTTTG CCAACTCTAC CATGAGCAAA AACCCAATGC
  CAACAGACCA AGAACTAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147562946	ENSMUSSNP5750994	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50599720					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34877268 () rs orientation: forward

Symbol	Name	Function Class
Stk3	serine/threonine kinase 3	within coordinates
Tssr133982	transcription start site region 133982	894 bp upstream
Tssr133983	transcription start site region 133983	781 bp upstream
Tssr133984	transcription start site region 133984	1700 bp downstream