rs50600294 SNP Detail

Summary

• ID
  rs50600294
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139287411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCCCAAA ATTCTTAGAC
  CAGCCTGGAG CCCAGACTAA GAAAATACGA ATTTCTACAT TGAAGTCCTT AGGGGCTTTT
  TATTTTGTCT GTCAAGATAA CCTAATATCA AATCAACCAG AAAACATTCT TATTTTATAT
  TTGCTTTCAA AGTCCTCCTA CATCTTCTAG ACAACTTTAT TTCCTTTATT AGAAAAAAAT
  W
  TTTTTGCTTG AAACTTCCTC TTTCTGATTT GAAAAGCTGT GTTTTTCACA GCTTTAGTCT
  TGATTTCTGT TTCGGTTTCT TTCTTTTTAT ATTAATAAAT GCTGTTCTTT GACAATTTCA
  TACATTCTGG TTACTTTCTC CCAACCCCTT ATTTTCCTTC AGGGCCTGCC AGTCTGACTC
  CTTCCATATA AATCCCTGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147661624	ENSMUSSNP4579979	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50600294					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139287411 () rs orientation: forward

Symbol	Name	Function Class
D2Mit339	DNA segment, Chr 2, Massachusetts Institute of Technology 339	741 bp distal