rs50600317 SNP Detail

Summary

• ID
  rs50600317
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90294252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG ACAGAGATGG AACCCAGCAG
  C
  GAGAACCCAG GAGGAAGACG AAGAC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148531526	ENSMUSSNP3525039	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325275160	CHEV_16_90497609	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50600317					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90294252 () rs orientation: forward

Symbol	Name	Function Class
Hunk	hormonally upregulated Neu-associated kinase	within coordinates
Rr519144	regulatory region 519144	432 bp proximal
Tssr139293	transcription start site region 139293	164 bp downstream
Tssr139294	transcription start site region 139294	151 bp downstream
Tssr139295	transcription start site region 139295	1133 bp upstream