rs50600949 SNP Detail

Summary

• ID
  rs50600949
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121268054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATTCTGTTGC AAAAGACTAC ATATCTAGCT AATATGTACC
  TTCGTTTAGG CTAGTACTAT AGCATCTCAA TTATGATGCC TACTTGTATG ACATCTTTGT
  K
  TGTGTGTGTG TATTTTTTTT TTCTGAACCC CCAACACCTG GCTGCTGGTC TTCTCATTTC
  AAGGTACCTT CTCCCCTGGT AGATCTACTC AGTAAGCTGT T                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135721873	ENSMUSSNP5370512	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50600949					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121268054 () rs orientation: forward

Symbol	Name	Function Class
Rr584089	regulatory region 584089	262 bp proximal
Slc44a3	solute carrier family 44, member 3	Intron