rs50602666 SNP Detail

Summary

• ID
  rs50602666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:92032395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGACATCC CAGGAACCTT TGGCTCTTTC CCGTTTTGAT
  AAAAACTGGT CAGACAGACA GAACAAAAGG CAGAGTGGGC ACATGGGTGA CGTAATGTAC
  R
  TGCATGGAAA ACATGCCTGA CAATGAATGG AAAAATCTTG GCAGGACAAG AAAGAAAAGG
  TGGCTTTGAT GAGAGACACA AGTTCAAGAC TTTACAAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145568287	ENSMUSSNP6756617	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss322790921	CHEV_8_93829666	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50602666					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92032395 () rs orientation: forward

Symbol	Name	Function Class
Gm45428	predicted gene 45428	200 bp downstream
Rpgrip1l	Rpgrip1-like	within coordinates
Rr382458	regulatory region 382458	420 bp downstream
Rr406224	regulatory region 406224	within coordinates
Rr407238	regulatory region 407238	392 bp distal
Rr667510	regulatory region 667510	805 bp distal