rs50604238 SNP Detail

Summary

• ID
  rs50604238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130971352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTTTTGC TATCACTTCA
  AAGTACAACT AAGAATATAC AATTGAAAAG TGAACCTCGA TGTAAACTTG AACATCGTGT
  AGGGAAATAT AGTGTATGTT CATGGTACAA GCATTTGACG GGGTGTGTCC AGTTACACAA
  GTGCATACAG AGGGCAGAGG GAAGCCATTC CTGTCGGTTG CCTTGAGATG GGGTTTCACC
  Y
  GGGTTTTCAC AGCTCTCTGG GTACACCTGT CTCCAACCTG AAATGTTGGG TTACAGGCAC
  AAGCAGCTTT GCTATTCACA CCTTCTGACA TGGTACATGG TAGAAGAAGA AAATAGTAGG
  GATAAATAAA TTCATATTAC ATTGTATACC TGTGTGGAAT TCTCAAGAAT AAAGGATTTG
  TTAAGAATTA GTTGAATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61067237	NES16057270	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50604238					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61067237	NES16057270	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130971352 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19815	CpG island 19815	1301 bp proximal
Gm73326	predicted gene, 73326	281 bp downstream
Pstk	phosphoseryl-tRNA kinase	1491 bp upstream
Rr400669	regulatory region 400669	1345 bp upstream
Rr656446	regulatory region 656446	1082 bp proximal
Rr656447	regulatory region 656447	1467 bp proximal
Tssr69565	transcription start site region 69565	1515 bp upstream
Tssr69566	transcription start site region 69566	1572 bp upstream