rs50604463 SNP Detail

Summary

• ID
  rs50604463
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:68759022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATTTTG TAAATTAGGG
  CCATTTAAAT CCATTGCTAT AATGGGGAGG AATGTGCTAG TTCTTGGCAC ATTTTTAAAA
  ACTGATGCTT TAATTGTAAT TTGCTTGTTC AGTGTTCTAG CAGAGCTCAT TAATTCCTTC
  ATCCTTGGTC TTGTGTTTAC CTTGCTGTAT TGGGTTCAGT GTGCCTTTAG GGATCTTCTA
  Y
  AGTACCACAG TTGTCATGAA TCTCTTTAGC TTATACTGAC CTTGCCCTGC TTACGTTATG
  AAGGGTAACT GTCCTGGATA TTACGATCTA GGATATTGTA CTTGACATCT TCATAGTATA
  ATCTACATAT ATAATAATTG ACACCTACAA TCACTAGGCT TCAGAGTTTT TGTGGACACA
  TTTTCTATTA TTCTGATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss62879042	NES17380633	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs50604463					SNP	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62879042	NES17380633	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:68759022 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D17Mit185	DNA segment, Chr 17, Massachusetts Institute of Technology 185			410 bp distal
L3mbtl4	L3MBTL4 histone methyl-lysine binding protein			Intron
				Noncoding-Transcript-Variant