rs50605699 SNP Detail

Summary

• ID
  rs50605699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165469014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCATCCTC TACCAGGCAA
  ATTGAGCTCC AGACACCAAT TCCCAGGGCT GGTTAGATAT TCTAGAATGC AGCCCGTAGG
  CAGGCAGCCA TTTGGTCCCA TCTGTCAGCA GAGGCTGCCA CCAAGAAAGC AGTTCAGACT
  TGAGTTGGGG GCACACTCCC TGGGTGACAG CTGTGGGACT GGCCTCACTT CTCTCTCCTC
  R
  GTCCCCTCTG CTGGATAGCT TTGTGGAGTG GGGAAATGGT TCAGTGGGTA AAGTGCTATT
  CACAAGAGTG AGCACCAGAG ATCGGATTCT GGGTGCTCGT ATAAAACTGA GTGAGATGGG
  GTGTGTTCAG TGTGTGAGCC CAGGGCTGAG GTTGGAGACA GGAGGATTCT GGGTGCTCAC
  TGCCAGCCAG CACTGCTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148241901	ENSMUSSNP125244	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320608511	CHEV_2_165452594	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50605699					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165469014 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	within coordinates
Rr569966	regulatory region 569966	854 bp proximal
Rr569967	regulatory region 569967	968 bp proximal