rs50605816 SNP Detail

Summary

• ID
  rs50605816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29980856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT GGAAGGGTTT GATTTTTAGC
  Y
  CAGAAGTCTG TTGGGGTTTG GGAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148672347	ENSMUSSNP5531714	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss322132953	CHEV_7_31066450	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50605816					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29980856 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	within coordinates
Cpgi18786	CpG island 18786	411 bp distal
Rr400235	regulatory region 400235	864 bp downstream
Rr644765	regulatory region 644765	1322 bp distal
Rr644766	regulatory region 644766	1367 bp distal
Rr644767	regulatory region 644767	534 bp distal
Rr644768	regulatory region 644768	9 bp distal
Rr644769	regulatory region 644769	414 bp proximal
Rr644770	regulatory region 644770	805 bp proximal
Tssr65667	transcription start site region 65667	1289 bp downstream
Tssr65668	transcription start site region 65668	1243 bp downstream
Tssr65669	transcription start site region 65669	847 bp downstream
Tssr71721	transcription start site region 71721	1007 bp upstream
Wdr62	WD repeat domain 62	1012 bp upstream