rs50605911 SNP Detail

Summary

• ID
  rs50605911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46990196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGATTAGC CCCTCACAGA
  GCGTTCTTGT CAAGCTGATC CGTTGTCCCT GGGGTCACCC AGGGTGTCTA CAGGCACGAG
  GAGTTCCTTT GACAGCTGTG GCTCGTATGC TGCCAGGACT AGAAACTTAA ACCAGAAAGG
  TATGTGTATA CTGAGAGTCG GGGGCAGGGA GGAGCGCCCT CAACTTTCTC AGCCGGACTA
  Y
  TGTTAGCGAA CACGCCACTT CCAGCAGCCC TGCCCCTGTC TGGGTCTCTA GAGGAGAGAT
  GGGGTAGGAG TGTAGATTGG AAAGAGGAAA GAAAGCAAAA ATACCTTTGG GCAGGACAAG
  AGAAAGCCCC AAAGATGAGA GGGGCCACGG CTTTGTAAAG ACAGCCGGCC AGCCTAGTGA
  TAACAGGTAT ATCTGAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62758076	NES17351015	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50605911					SNP	T	T	T	T	T	T	T	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62758076	NES17351015	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46990196 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	1184 bp proximal
Klhdc3	kelch domain containing 3	within coordinates
Mea1	male enhanced antigen 1	within coordinates
Rr405317	regulatory region 405317	1519 bp upstream
Rr527794	regulatory region 527794	within coordinates
Rr527795	regulatory region 527795	720 bp proximal
Tssr5136	transcription start site region 5136	1506 bp downstream
Tssr5137	transcription start site region 5137	1665 bp downstream
Tssr144870	transcription start site region 144870	477 bp downstream
Tssr144871	transcription start site region 144871	443 bp downstream
Tssr144872	transcription start site region 144872	1154 bp upstream
Tssr144873	transcription start site region 144873	1710 bp upstream
Tssr144874	transcription start site region 144874	1768 bp upstream
Tssr148364	transcription start site region 148364	688 bp upstream
Tssr148365	transcription start site region 148365	648 bp upstream
Tssr148366	transcription start site region 148366	626 bp upstream
Tssr148367	transcription start site region 148367	1456 bp downstream
Tssr148368	transcription start site region 148368	1479 bp downstream
Tssr148369	transcription start site region 148369	1494 bp downstream
Tssr148370	transcription start site region 148370	1516 bp downstream
Tssr148371	transcription start site region 148371	1577 bp downstream
Tssr148372	transcription start site region 148372	1600 bp downstream