rs50605943 SNP Detail

Summary

• ID
  rs50605943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:70954648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTA GGCAGCACAG TCGGTCCAAG
  R
  CACTTCAGTA TTTGCAGGCA GTAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145126690	ENSMUSSNP2189016	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss322700339	CHEV_8_73025897	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50605943					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70954648 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20464	CpG island 20464			677 bp distal
Cpgi20465	CpG island 20465			293 bp proximal
Cpgi20466	CpG island 20466			879 bp proximal
Crlf1	cytokine receptor-like factor 1			Intron
				Noncoding-Transcript-Variant
Gm63784	predicted gene, 63784			within coordinates
Rr664779	regulatory region 664779			within coordinates
Rr664780	regulatory region 664780			77 bp proximal
Rr664781	regulatory region 664781			1256 bp proximal
Tssr77747	transcription start site region 77747			826 bp downstream