rs50607488 SNP Detail

Summary

• ID
  rs50607488
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:49316344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTAATT TCCGGGTCAT
  GGGCTGTTCC TCCATCCCTT CCCTGCCAAC TGCTCTCACA GACTGACCTG TCTCTGCCCT
  GCCCTGAGCT CTGGACTCTA GCAAAAATCC TGACCATGTC AGGAGAAGGC AACTAGATAG
  AACACAGAAA CGCACACTGG ACACGGTACC TTCTTCCCTC AGGACACGTG ACAGCTCCTC
  R
  TGTGCTGAGA GAGGCAACCT GTGGTCACTC CTCACTGAGG GAAGTGGGGA AAGGAAGACA
  CTGAGGAGCG TGTGGTTAGT CCTGGCCCTT CATCTAACCA CACTGGATGG GCCCCTTTCC
  CACCCCTGTT ATTGCAGATG ACTAGACAGG GAAGCTAGAT ACTGAAGGTA TTGCTGGAAT
  CTCTCTCTCT CTCTCTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148995262	ENSMUSSNP5612944	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50607488					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:49316344 () rs orientation: forward

Symbol	Name	Function Class
Gm40942	predicted gene, 40942	within coordinates
Rr479356	regulatory region 479356	1405 bp distal
Rr479357	regulatory region 479357	703 bp distal