rs50608037 SNP Detail

Summary

• ID
  rs50608037
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65138965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAT TTGCATGCAT GTGCATGTTT
  G
  TGTGACTGTG AGTGTAGGTA TGTGC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149170470	ENSMUSSNP4186309	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss319746471	CHEV_1_65146380	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50608037					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65138965 () rs orientation: forward

Symbol	Name	Function Class
Cryga	crystallin, gamma A	587 bp downstream
Gm28845	predicted gene 28845	813 bp downstream
Tssr102	transcription start site region 102	842 bp upstream
Tssr7112	transcription start site region 7112	587 bp upstream
Tssr7113	transcription start site region 7113	702 bp upstream
Tssr7114	transcription start site region 7114	712 bp upstream
Tssr7115	transcription start site region 7115	728 bp upstream
Tssr7116	transcription start site region 7116	789 bp upstream
Tssr7117	transcription start site region 7117	817 bp upstream
Tssr7118	transcription start site region 7118	847 bp upstream
Tssr11968	transcription start site region 11968	617 bp downstream
Tssr11969	transcription start site region 11969	647 bp downstream
Tssr11970	transcription start site region 11970	821 bp downstream
Tssr11971	transcription start site region 11971	844 bp downstream
Tssr11972	transcription start site region 11972	866 bp downstream