rs50609123 SNP Detail

Summary

• ID
  rs50609123
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:86932904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTAAATT AAGATAATCC
  CTGTGGAAGT CTGGTGGTGG GGGGGAGGGG ATTTGATAAG GCTGGGTTGG GCCTACCGGG
  TTGGAATTTC TTCACTGTTG CTACCCCGGG CTTTGTAACC TTGAGCTCTG TTTATATAAT
  ACTTTCCTTC TGCAAAATGG AATTATCTCA GCTTGATGGG TTGTTGGAGA CTTCATTTTG
  T
  GCCTTGTGTT TGTGACAGAC TACTCTGAGA CAGGTAAAAA GATAAGTACT AGGCAAGTAA
  TTCCTTTGCT TCAGCTTATT GTTTTCACTA TAATATAGAT ACATTATATA AAGAGGTATT
  TATGTTATTA AACCTGTAAT GCCTTATACA AAGTAGGTTC CATTCCATTT TGCAGACTAG
  GACAATAGAG AGTCTGAAGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137928824	ENSMUSSNP5531502	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs50609123					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:86932904 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4926	CpG island 4926	1006 bp distal
Cpgi4927	CpG island 4927	1913 bp proximal
Gm60793	predicted gene, 60793	630 bp downstream
Irf2bpl	interferon regulatory factor 2 binding protein-like	1332 bp upstream
Rr387576	regulatory region 387576	270 bp downstream
Rr470235	regulatory region 470235	1734 bp distal
Rr470236	regulatory region 470236	842 bp distal
Rr470237	regulatory region 470237	1465 bp proximal
Tssr117132	transcription start site region 117132	1717 bp upstream
Tssr117133	transcription start site region 117133	1655 bp upstream
Tssr117134	transcription start site region 117134	1416 bp upstream
Tssr117135	transcription start site region 117135	1380 bp upstream
Tssr117136	transcription start site region 117136	1324 bp upstream
Tssr117137	transcription start site region 117137	1288 bp upstream
Tssr117138	transcription start site region 117138	1272 bp upstream
Tssr117139	transcription start site region 117139	244 bp upstream