rs50609984 SNP Detail

Summary

• ID
  rs50609984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30094220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTA GTGAACTAGA GGTCTGACCA
  Y
  ATTGGCTCTC CCAAATCGGG TTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148676590	ENSMUSSNP3215202	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322133924	CHEV_7_31179814	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50609984					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30094220 () rs orientation: forward

Symbol	Name	Function Class
Gm42376	predicted gene, 42376	245 bp upstream
Rr155979	regulatory region 155979	181 bp proximal
Tssr2182	transcription start site region 2182	415 bp upstream
Tssr2183	transcription start site region 2183	31 bp upstream
Tssr71732	transcription start site region 71732	485 bp upstream
Tssr71733	transcription start site region 71733	354 bp upstream
Tssr71734	transcription start site region 71734	243 bp upstream
Tssr71735	transcription start site region 71735	220 bp upstream