rs50610053 SNP Detail

Summary

• ID
  rs50610053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34932345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCT CATTTCTGGC TTTGCTTACT
  R
  CTGGGAGTTG GGTGGGGTGG CAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148805334	ENSMUSSNP4170020	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322156694	CHEV_7_36017939	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50610053					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34932345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	1639 bp proximal
Gm38989	predicted gene, 38989	within coordinates
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	1850 bp downstream
Rr645337	regulatory region 645337	9 bp proximal
Rr645338	regulatory region 645338	835 bp proximal
Rr645339	regulatory region 645339	1711 bp proximal
Rr645340	regulatory region 645340	1773 bp proximal