rs50611339 SNP Detail

Summary

• ID
  rs50611339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91177553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CAGGAGGTAG GGTCTCTCTA CATATCTCTG GCTGTCCTGG
  AATTCACTAT GTAGACCAGG CCTTCCTCTT GTCTCTGAGC GCCGGGACTG AGGTATGCGC
  Y
  GGAACTCCCG GCCTGAAGTA GATTTTTAAA AGTGCATATA GGAATATGAG AAATTAAAAA
  AATAAGGAGC AGGAAGAGTG TCCTCACACC CAGCAGCCAC C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss144943407	ENSMUSSNP2134761	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs50611339					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91177553 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	65 bp proximal
Rr366958	regulatory region 366958	114 bp upstream
Tssr8065	transcription start site region 8065	362 bp upstream
Tssr8066	transcription start site region 8066	466 bp upstream
Tssr8067	transcription start site region 8067	480 bp upstream
Tssr8068	transcription start site region 8068	651 bp upstream
Tssr8069	transcription start site region 8069	744 bp upstream
Tssr12938	transcription start site region 12938	209 bp downstream
Tssr12939	transcription start site region 12939	1541 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	within coordinates