rs50611943 SNP Detail

Summary

• ID
  rs50611943
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:150839075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCCATTT ACTGACCAGT
  TGGTAAAGGC AGGTAATTGG AGATGCCCAA GTGGCTCACT TAGATGCCAG AGATATTGCT
  TCTTGCCTCT ATTTATAACA GCAACTTGAT CCCCTTCTGC TGACTAGGGT CTGTTGCCTC
  TGTCAAAACA GTGATCCTGT TTTCATGTCT GGTGTCTTGG CATAGACAAA GTCCTGGTGG
  Y
  AGAGTGTTGA AAGTTTACTG TGTTTCTTCT CATGTCTACC AGTAGCTGTG GCTCCTTTAA
  GTGCCAGACA TGGCTCACTC AGAGAGCTAC AGGTGCAGGC ACCCGAGGTG AGTGAGGATA
  TCCCTACTCC TCTGCCTGCT CCTGGAACAT GCACCTATCC TGGGGAGGAC AGCATTACAG
  ACTGCTGATT TAGCATGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60858725	NES15999357	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50611943					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60858725	NES15999357	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150839075 () rs orientation: forward

Symbol	Name	Function Class
Rr625814	regulatory region 625814	1510 bp proximal