rs50612566 SNP Detail

Summary

• ID
  rs50612566
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127204225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACAGACA GTGGTAATCA
  AAAGTGGAAG TGCAGCAGAT ACTTCGAAAG CTGCTTTCCT TAAAGACCAT TTGAGGCATC
  GGGGCAAAGG CCTAACATCG CAGCCTCCAT TTTTATCTCT CTGCTTCCTC TCATTTAGCT
  GAAGATGTGA AGATTAACTC ATCATCCTAA AAGCCATCCT TGAGTTCTTC AGAACATCTT
  S
  CTGGACCAGC ACCGCAGTGA TGTGGGGGAA CCACACCCTG ACCAGGACTG CTTAAGTAAG
  CGTAGCTCAC AGTCTTTAAA AACCTAATCA GCATTCTAAA GTTGGAGTTG GGGTTCCTGG
  ACTTTATATC TTCCTCTCCC TTCCCCAATG TGGCCAAATC AATCAAATCT CCCTTTGTCT
  GCTTTTCACC ACTATTCCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135862698	ENSMUSSNP4245201	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320953874	CHEV_3_127113494	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50612566					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127204225 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	1661 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584773	regulatory region 584773	1620 bp distal
Rr584774	regulatory region 584774	1027 bp distal
Tssr35571	transcription start site region 35571	1689 bp upstream
Tssr35572	transcription start site region 35572	1595 bp upstream
Tssr35573	transcription start site region 35573	1568 bp upstream
Tssr35574	transcription start site region 35574	1533 bp upstream
Tssr35575	transcription start site region 35575	1512 bp upstream