rs50613221 SNP Detail

Summary

• ID
  rs50613221
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26752294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGAGGGA GAGCAACACT
  CATGCTTGCC TAGCCGTCCC CATGAATACA CATTAAATGT GTACAGAGCC CTTTGACTGA
  AGGTTCTGCC ACTTGAGCCC AGAAAACTGT CCTGAGGGGT CTTGCGTGGC AACACTCTCC
  TGGAGATTCT GAGAATTCCC CTTGCTGACT TCCCACTAGC ACACATGCGC ATTGGGTTCT
  S
  CAGCCATGCC AGGGACCGCT CCACTCAGTG TGCAATGGAT GCAAGTTGCT CTCGAGCACT
  TCAGGGAATG GGAAACAAAG CTGAGAAGCT TCAAGTGATC ACAGGGAAAG GAGAGTGAGG
  CCCCTCGCCA GGAGTCAGCA TCTGTAGGAT TGAAGCGACT TCCAGATACA GTGCAGGATT
  CGATGGCATG GGAGTTACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60554840	NES16569779	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	G	C	C	C	G		C	C	G	C
ss145405332	ENSMUSSNP5316837	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50613221					SNP	C	C	C	C	C	C	C	G	C	C	C	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554840	NES16569779	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26752294 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	within coordinates
Tssr143239	transcription start site region 143239	1481 bp downstream
Tssr143240	transcription start site region 143240	434 bp downstream
Tssr143241	transcription start site region 143241	420 bp downstream
Tssr143242	transcription start site region 143242	390 bp downstream
Tssr143243	transcription start site region 143243	365 bp downstream
Tssr143244	transcription start site region 143244	348 bp downstream
Tssr143245	transcription start site region 143245	805 bp upstream
Tssr146959	transcription start site region 146959	1623 bp upstream
Tssr146960	transcription start site region 146960	703 bp upstream
Tssr146961	transcription start site region 146961	673 bp upstream
Tssr146962	transcription start site region 146962	644 bp upstream
Tssr146963	transcription start site region 146963	597 bp upstream