rs50614304 SNP Detail

Summary

• ID
  rs50614304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:62142116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCTTCCT AACTTGCCCT
  CTCAGGTCAT TAATTTCTCA GAAAACATTT CTCTCACTTG CTTTTTTTCA CATAATGAAA
  GAAGCTACTT ACTTTCAAAT AAAGCAGAAT GATTTTAGAG CAAGGGAATG GCTTTGCAGG
  CACCATCAGC ACAAGGACCA TTGCCTGAGG AGGAGATGCC ATCAAACATT CCTCTGCAAA
  Y
  CACATGATGA ATGTGAGATG GCTTCTTTCC CTTCACTTTT CAAAGCCAGC AAAGCTGAGG
  GGTATTTTCT TATGAGTGCT TGCAACTTGG GACAAGTAAG TTAGACCAGA AGAAACCGCT
  TTGTCCCCCG AGACAGTTGC ACAACAGTCA CATTATAAGG ATTCATTTTT AATCCTGGAG
  TGAAGTTTCA CTTATATAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60476140	NES16455402	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C		T	C	T
ss148233779	ENSMUSSNP4064134	ENSEMBL	ENSEMBL_Sanger	f	SNP									C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50614304					SNP	T	T	T	T	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60476140	NES16455402	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:62142116 () rs orientation: forward

Symbol	Name	Function Class
Rr318921	regulatory region 318921	1085 bp proximal