rs50616883 SNP Detail

Summary

• ID
  rs50616883
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74364300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCA GCCTACCGGA TTTGGGAAAT
  R
  TGTTCTTAAC TGGCCTTCTG GTTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148664139	ENSMUSSNP2209550	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321569506	CHEV_5_74599664	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50616883					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74364300 () rs orientation: forward

Symbol	Name	Function Class
D5Buc50	DNA segment, Chr 5, Bucan 50	1229 bp distal
Rr613252	regulatory region 613252	1040 bp distal
Rr613253	regulatory region 613253	1919 bp proximal
Scfd2	Sec1 family domain containing 2	1177 bp downstream