rs50617354 SNP Detail

Summary

• ID
  rs50617354
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171487226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAT CCATACAATA CACAAGATAT
  M
  CACCTTGCTG TGAGTTGGTA GAGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120001856	PARCsnp_1.15005	PARC_SEQ	INBRED	f	SNP		C	A
ss120004152	PARCsnp_1.04344	PARC_SEQ	INBRED	f	SNP		C	A
ss146171818	ENSMUSSNP3281604	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320120220	CHEV_1_173589789	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs50617354					SNP	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171487226 () rs orientation: forward

Symbol	Name	Function Class
Gm70589	predicted gene, 70589	635 bp downstream
Rr423376	regulatory region 423376	692 bp distal
Rr423377	regulatory region 423377	730 bp distal