rs50617902 SNP Detail

Summary

• ID
  rs50617902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53498301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAAAGA GAAAGGGGGT
  GGGGGTGGGG GAGCCTCAAT CACAAACACA GCTACAGGCA TAGTTCGAAT TCTAGCTTCC
  TCTCTTTTGA GTTGACACAA AGAAAGCTAC AGTAGAGAAA TACGAGAGAG GGAGAAATGT
  CAAGACTCCT GTTGACCGAA TGAAAATCTA CACAGGGAGA AGCAATCGGG GAAGAGGCAC
  R
  GGGTCTGTTT CCTCTGAAAT ATTTAGAAGT AAAAACTACA GACAATTTAT GCTGTCGGAG
  GCTCGCTGAG AATCAAAGGC AACAGATCAT GCGGCTGAAG CTGTGAAGGG ATTGCTTCCT
  CATCGTTTGA CATTTAACTC ACCTCAGCCT CTTCAAAAGT TCCTACAAGA CGCACGCAGG
  AAGCAAAAGG ACGCTCTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135182466	ENSMUSSNP4269845	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50617902					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53498301 () rs orientation: forward

Symbol	Name	Function Class
Frem2	Fras1 related extracellular matrix protein 2	Intron
Rr576723	regulatory region 576723	54 bp distal
Rr576724	regulatory region 576724	611 bp distal