rs50618478 SNP Detail

Summary

• ID
  rs50618478
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90183817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTA CCCGCGAAGC TACCCCGCAC
  T
  GTCTTTCTGT TTTGTTTTGG AAGGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148529276	ENSMUSSNP6778736	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs50618478					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90183817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8424	CpG island 8424	within coordinates
Gm60085	predicted gene, 60085	918 bp downstream
Hunk	hormonally upregulated Neu-associated kinase	within coordinates
Rr519119	regulatory region 519119	1800 bp distal
Rr519120	regulatory region 519120	906 bp distal
Rr519121	regulatory region 519121	414 bp distal
Rr519122	regulatory region 519122	22 bp proximal
Tssr139286	transcription start site region 139286	1044 bp downstream
Tssr139287	transcription start site region 139287	985 bp downstream
Tssr139288	transcription start site region 139288	960 bp downstream
Tssr139289	transcription start site region 139289	906 bp downstream
Tssr139290	transcription start site region 139290	877 bp downstream
Tssr139291	transcription start site region 139291	475 bp downstream