rs50618974 SNP Detail

Summary

• ID
  rs50618974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48989878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGACAAA AGTGACCCCG
  TTATGCGACT CCACCAAGCA GGTGAAATCC GTCAAAGAGC TGGGTGGACC ACCTAGCTAA
  CTTGTGAAAC GTGGACCCCC CTGAATCTAA CATGGCAGAA TCTCTCTTTA TCATGTTCAC
  CCTGAGACTC GGTGATGACA TGAGCTGAGC TGACTTCCCA CCAAGCCACG AATGACTTCA
  Y
  TGGTCTCTGA GGCAGTGCAG GCACTTTGGG ACTGTCCTTA TTATTTCTGT CAATCACATC
  AAAACATCCA CTTAAGCTTT TAGTTTGCAC CCATTCCTTC AAATAAAGAT CTTTGGTACC
  TCCCTCACTG AGTTACCCAT CATGTCCCCT GACCAGGGAG AGAGAGCATT CTGCCTGCCC
  TGCTCCAGCC ACCTCCTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62763758	NES17344118	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	C	C	C	C	C	C
ss145722099	ENSMUSSNP5432822	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50618974					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62763758	NES17344118	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48989878 () rs orientation: forward

Symbol	Name	Function Class
Tssr148548	transcription start site region 148548	119 bp downstream