rs50619594 SNP Detail

Summary

• ID
  rs50619594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25608443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTAAAA TATAGATGAA
  CTGATCACAA AGAGCAGCTG CCCCGACTTC GCTTCGGTGC CCTGTAAGAA GGCTCCTTGG
  CTCACAGTTA CTGCCTAGCG GGATACTCAA AAACCTCAGA ACCCCTTAGC CATGCTGTTT
  CTATCACCAG AGCGGTTGGT TTTGAGAACT TACGGTAACT GTGGAGAGAA AGCCGAAGAG
  R
  TTTGGGTCTG AGAGTTAGGA TTAGGTGAGG CAGAGGGAGG GAAGGCTGGA AAGAAATACC
  AGCCATGCCA GGTACTCAGG AGACTGAGAC AAGAGAGGTC CAACAGGTTC CAGGCCAGCC
  TGGGTTACAT GGCGATATGT TCTCAAGGAG TGAGGAGGGA GGGAGGAGAG GGAGGAGGAG
  AAAGAGAGAG ACAGAGAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60584250	NES16331456	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50619594					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60584250	NES16331456	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25608443 () rs orientation: forward

Symbol	Name	Function Class
Gm63710	predicted gene, 63710	within coordinates
Rr400801	regulatory region 400801	173 bp downstream
Rr400802	regulatory region 400802	685 bp upstream
Rr400803	regulatory region 400803	1024 bp upstream
Rr661050	regulatory region 661050	within coordinates
Rr661051	regulatory region 661051	128 bp proximal
Tssr76672	transcription start site region 76672	145 bp downstream
Tssr80688	transcription start site region 80688	652 bp downstream