rs50620015 SNP Detail

Summary

• ID
  rs50620015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125925084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGACCCA ATACATAAGG
  AATGTATACA TCAAAAGAAG GCGGGGACCA GGCTGCTGCC GAAAAGAAGG GAGCCAGGTG
  TAAACTGGTC TATTGTTAAA CCCACCACCA GGGGTTCTGC ACTAGCAGAC CTTTTCAAGA
  ATACTGCAAT ACCCCAACAC CCTATGTCCT GGGTCTACAG AAGAATTTAC CAACTTGCTT
  Y
  TAATATGAAG CTTGCAATAC CTAGCTGTAG AGAAGATCCC TGTCTCAGTG GGATTCCCTA
  GCTCTAATAT GGTATTCCCT TTTCTACTGT CCTTAGTAAA TATTTTTGCA GACCAGCTCT
  GAGCTACTGG CTCCGTCTTT TGTAATGCTT AATTAGTTAC TGAATAGGTA ACTTCCTTTC
  TGCATTCCTG CGGAATTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145872503	ENSMUSSNP5830191	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50620015					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125925084 () rs orientation: forward

Symbol	Name	Function Class
D7Csu3	DNA segment, Chr 7, Central Connecticut State University 3	120 bp distal
D7Csu4	DNA segment, Chr 7, Central Connecticut State University 4	503 bp distal
Rr153599	regulatory region 153599	1684 bp distal
Rr153600	regulatory region 153600	within coordinates
Rr381445	regulatory region 381445	within coordinates
Tssr69016	transcription start site region 69016	1920 bp downstream
Tssr74630	transcription start site region 74630	980 bp upstream
Tssr74631	transcription start site region 74631	1295 bp downstream