rs50620350 SNP Detail

Summary

• ID
  rs50620350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:81199359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACTGAGG AGACCGTGCA
  GGAGCCAAGA GACCAAGGGC AGGGCTGTGG GCTGCAGGGG ACTGTGAGCA AGCGCATGCA
  AATGTGCATA TTTGGGGGTA TGTGTCTAGG GTCCCCTGGA ACTTGAAATG GAAACCACAG
  AGGCAGTTTC AGGAGACACT GCGGCACTCC CCAGGGACCA GCAGCTGGAC CTTTCTCTCC
  Y
  GTCCTTCATT CACCCTCTGT TCCCTAGCTC TGAGCTGTGC TGTGGGGCCT GCATCAGCTT
  CTACCACTGG GTGATGACAG CAGTGACAGG CGGCGTGGGT GTGGCCGCGG CTCTGGCTCT
  CTGCAGCCTC CTCATCTGGC CCATCCGCAT TCGCAACCGT GGGTCTCCAT TACTAGGACT
  TGGGTGGGGG CGGGGTGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52387638	NES15272377	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50620350					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52387638	NES15272377	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81199359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1975	CpG island 1975	306 bp proximal
Mfsd12	major facilitator superfamily domain containing 12	Intron
Tektip1	tektin bundle interacting protein 1	mRNA-UTR
Tssr94743	transcription start site region 94743	501 bp upstream
Tssr94744	transcription start site region 94744	760 bp upstream
Tssr94745	transcription start site region 94745	795 bp upstream
Tssr94746	transcription start site region 94746	872 bp upstream
Tssr94747	transcription start site region 94747	890 bp upstream
Tssr98595	transcription start site region 98595	1321 bp downstream