rs50621241 SNP Detail

Summary

• ID
  rs50621241
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123366909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCGTGAT CCTCCTGCTT
  CATCTTTCTG AGTGCGGGAA TCGCGGGCCT GTGCAACCAT GATATAGGCC TTAGTGAAAC
  TGCCTCGGTC GCAAGGATAG ACTATTTGCT GAGGCATAGT GATAATCGCT ACTGTCACTT
  TCTGTAGGTG ACATTACCAG GTTTGGCCTC GCCACCCGCT TTTCTTTAGG ACTTTATAAA
  Y
  GTCAACTGGG AGAATTAATT GGGCATCTTG TTAAAATGCA CGTTGTAGCC AGGGGAGGCA
  TCCCTATTTA AGCCCAGCGT TTAGAGAGTG GAGGCAGGGG GATCAGGACT TGAGGGTTAT
  TCTTGCCTAC ATAGTAAGCT CGAGGCTGTC CTGGGTTATA TTAGACCTTG TCTCAAAAAA
  AAACCAAAAA AAAAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60834926	NES16023906	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50621241					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60834926	NES16023906	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123366909 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16580	CpG island 16580	139 bp distal
Psmd9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	within coordinates
Rr124341	regulatory region 124341	within coordinates
Rr399344	regulatory region 399344	475 bp downstream
Tssr48774	transcription start site region 48774	619 bp downstream
Tssr48775	transcription start site region 48775	545 bp downstream